matlab script-based analysis Search Results


matlab image analysis toolbox  (MathWorks Inc)
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matlab based mtex  (MathWorks Inc)
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matlab software script  (MathWorks Inc)
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MathWorks Inc matlab software script
Matlab Software Script, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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statview  (SAS institute)
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matlab (r2016b  (Thorlabs)
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gui-based multiphysics, with a specialized computational fluid dynamics module  (ANSYS inc)
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graphical user interface (gui)-based multiphysics with a specialized microfluidics module  (COMSOL Inc)
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microsoft excel  (MathWorks Inc)
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cortex software development kit  (Motion Analysis Corporation)
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matlab r2023b licensed version  (MathWorks Inc)
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ansys-based fsi analysis module  (ANSYS inc)
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cobra toolbox  (SourceForge net)
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SourceForge net cobra toolbox
The process for genome-scale model reconstruction. (1) Metabolic properties including associations between genes, enzymes and reactions were extracted from the genomic metabolic databases, stored and curated in an Excel spread-sheet; (2) a 2D reaction centric SBML representation was generated using an in house java application. (3) The stoichiometric matrix, as well as reversibility constraints and the objective function were extracted from the SBML; (4) the relevant linear programming problems were solved using the <t>COBRA</t> <t>toolbox</t> . (5) The model was refined in an iterative process, accessing the best available information in the literature and online data sources to achieve metabolic functionality.
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Image Search Results


The process for genome-scale model reconstruction. (1) Metabolic properties including associations between genes, enzymes and reactions were extracted from the genomic metabolic databases, stored and curated in an Excel spread-sheet; (2) a 2D reaction centric SBML representation was generated using an in house java application. (3) The stoichiometric matrix, as well as reversibility constraints and the objective function were extracted from the SBML; (4) the relevant linear programming problems were solved using the COBRA toolbox . (5) The model was refined in an iterative process, accessing the best available information in the literature and online data sources to achieve metabolic functionality.

Journal: BMC Genomics

Article Title: AlgaGEM – a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome

doi: 10.1186/1471-2164-12-S4-S5

Figure Lengend Snippet: The process for genome-scale model reconstruction. (1) Metabolic properties including associations between genes, enzymes and reactions were extracted from the genomic metabolic databases, stored and curated in an Excel spread-sheet; (2) a 2D reaction centric SBML representation was generated using an in house java application. (3) The stoichiometric matrix, as well as reversibility constraints and the objective function were extracted from the SBML; (4) the relevant linear programming problems were solved using the COBRA toolbox . (5) The model was refined in an iterative process, accessing the best available information in the literature and online data sources to achieve metabolic functionality.

Article Snippet: Constraint-based reconstruction and analysis was performed using COBRA toolbox ( http://opencobra.sourceforge.net/ ) [ ]; a set of MATLAB scripts for constraint-based modelling run from within the MATLAB environment (Version 7.3, The MathWorks, Inc.).

Techniques: Generated, Combined Bisulfite Restriction Analysis Assay